PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s948451g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 332aa    MW: 37130 Da    PI: 6.6375
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s948451g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34191112103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y++++d++++ +i+w + +nsf+vld+ +f++ +Lp+yFkhsnf+SFvRQLn+YgFkkv+ ++         weF+h+sF +g+++l
  PDK_30s948451g002  19 FVAKTYQMVNDPRTDAWIRWGNGNNSFLVLDPADFSHLLLPSYFKHSNFSSFVRQLNTYGFKKVDPDR---------WEFAHESFLRGQTHL 101
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l  i r+k++
  PDK_30s948451g002 102 LPCIVRRKKR 111
                        ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3713102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5315108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3415108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.2E-171942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-2919108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-175769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEKSSCGKI GYQIQVAPFV AKTYQMVNDP RTDAWIRWGN GNNSFLVLDP ADFSHLLLPS  60
YFKHSNFSSF VRQLNTYGFK KVDPDRWEFA HESFLRGQTH LLPCIVRRKK RNEGGSSSSS  120
SDKKEGIEGE EEEESLFKEL GRLRQEQRAL DEELQRMNKR LQATERRPQQ MMSFLVKVAE  180
DPDFLPRLIL SKKQQLAPEK KRRLVAPSTP PSFSPPPPPP PSLLMASAVS PPLDIDSAAE  240
QTNFSTLEHQ AGPLTLEAER LLLMASSTLV DTGCDGGVGV DNSISYTNVR DSDTVISGNH  300
MRFLPEFGVA ETSSTTQKAV PFPFSLLGHG FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-221610817120Heat shock factor protein 1
5d5v_D5e-221610826129Heat shock factor protein 1
5d5v_B5e-221610826129Heat shock factor protein 1
5d5u_B5e-221610826129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924752.10.0PREDICTED: heat stress transcription factor C-1b-like
SwissprotQ6VBA47e-81HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLM0SJK04e-92M0SJK0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P31860_0011e-91(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-73heat shock transcription factor C1